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CABRI Guidelines for Catalogue Production

Guidelines prepared for CABRI by BCCM, CBS, CERDIC, DSMZ, ECACC, HGMP, INRC, MSDN
Page layout by CERDIC


Data input & authentication Flat file preparation Flat file submission


Data input & authentication for plant cell viruses

Data Sets

Data entry and validation

Accessionnumber

Virus name

Virus Name Abbreviation

Former Name

Genus

Pathotype, Serotype, Strain

Original Host Plant

Geographic Origin

Isolate History

Reference Isolate

Quarantine Regulations

Remarks


Accession Number

Field

Accession Number

Description

Accession number assigned by the collection

Input process

unique identifier

Required for

MDS

Virus Name

Field

Virus Name

Description

Valid species name of the virus

Input process

Should be entered according to the:
  • Names that have not yet been approved by ICTV are printed between quotation marks.

Required for

MDS

Virus Name Abbreviation

Field

Virus Name Abbreviation

Description

Species name abbreviation

Input process

  • abbreviation entered according to the ICTV, 1995: http://www.ncbi.nlm.nih.gov/ICTV/
  • abbreviations that have not yet been approved by ICTV are printed between quotation marks.

Required for

MDS

Former Name

Field

Former Name

Description

Former name of the isolate, e.g., in case a patho- or serotype has been assigned to another species

Input process

 Former name entered according to the ICTV: http://www.ncbi.nlm.nih.gov/ICTV/

Required for

MDS

Genus

Field

Genus

Description

Genus to which the virus species has been assigned

Input process

Genus name entered according to the ICTV: http://www.ncbi.nlm.nih.gov/ICTV/

Required for

MDS

Pathotype, Serotype, Strain

Field

Pathotype_Serotype_Strain

Description

"Pathotype: ", "Serotype: " or "Strain: " followed by pathotype, serotype or strain designation.

Input process

 

Required for

MDS

Original Host Plant

Field

Original_Host_Plant

Description

should contain:
- Original host plant
- Subspecies
- variety
- cultivar or breeding line
- vernacular name

Input process

Original host plant:
- species (latin binominal),
- subspecies (latin),
- variety (latin)
- cultivar or breeding line (original designation),

vernacular name (English or original designation). The vernacular name is listed only in special cases, e.g., if the vernacular name given by the depositor cannot be unequivocally assigned to a plant species.

Required for

MDS

Geographic Origin

Field

Geographic Origin

Description

Country, and, if available, more detailed information on the geographic position where the original host plant was found.

Input process

Free text

Required for

MDS

Isolate History

Field

Isolate History

Description

Name of the scientist, who isolated the specimen and of persons or organisations that kept it before accessioning.

Input process

After each name (person or organisation), the respective isolate designation is given between single quotation marks.

Required for

MDS

Reference Isolate

Field

Reference Isolate

Description

Literature on the virus isolate

Input process

new entry:

JournalTitle Year;Volume(issue):beginning page#-ending page#

The journal title is abbreviated following international standard rules.

The abbreviations are without dot. Authors and title of the article are not mentioned.

existing catalogues: conversion by SRS following CABRI agreed

Required for

MDS

Quarantine Regulations

Field

Quarantine Regulations

Description

should contain:
"yes" if EU quarantine regulations for the virus species are known.

Input process

Yes/no

Required for

MDS

Remarks

Field

Remarks

Description

Special features of the isolate, e.g., virulence

Input process

Free text

Required for

MDS
 
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Site maintained by Paolo Romano. Last revised: March 2014.