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CABRI Guidelines for Catalogue Production

Guidelines prepared for CABRI by BCCM, CBS, CERDIC, DSMZ, ECACC, HGMP, INRC, MSDN
Page layout by CERDIC


Data input & authentication Flat file preparation Flat file submission


Data input & authentication for genomic libraries

Data Sets

Data entry and validation

Library Name

Organism

Type of Library

Vector

Insert Size

Library coverage

Vector

Library coverage

MTA required


Library Name

Field

Library Name

Description

library Identifier e.g. WI/MIT, RCPI1

Input Process

Ensure Every Library has Unique identifier,

New Library as given by depositor.

Required for

MDS

Organism

Field

Organism

Description

The Organism represented in the Library

Input Process

CABRI agreed list (Note: may have multiple species):

Organism       Synonym
Mouse       Murine, Mus Musculus
Human       Homo Sapiens
Rat        
Fugu        
Drosophila        
Dog       Canine

Required for

MDS

Type of Library

Field

Type

Description

Type of Library

Input Process

CABRI agreed list:
PAC
BAC
YAC
PI
cDNA

Required for

MDS

Vector

Field

Vector

Description

Vector name , more specific than type as will be specific about vector e.g. pCYPAC, Lawrist4

Input Process

Supplied by depositor, may have multiple vectors per library

Required for

MDS

Insert Size

Field

Insert Size

Description

Average size of inserts in vector in Kb

Input Process

Numeric entry

Required for

MDS

Library coverage

Field

Library coverage

Description

Degree of coverage

Input Process

Numeric entry

Required for

MDS

MTA required

Field

MTA required

Description

Is a material Transfer Agreement required

Input Process

"Yes" or "No"

Required for

MDS

 
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Site maintained by Paolo Romano. Last revised: March 2014.